AI Agent Architecture: From Single Tools to Multi-Agent Systems

The term "AI agent" gets thrown around loosely. Is it just an LLM with function calling? A complex multi-agent system? Something in between?

After building systems across this spectrum, I've learned that agent architecture isn't binary—it's a progression. Understanding where you are on that progression, and where you need to be, is critical to building systems that work.

What Actually Defines an Agent?

Let's start with a working definition:

An AI agent is a system that autonomously pursues goals by perceiving its environment, making decisions, and taking actions.

This distinguishes agents from simple LLM usage:

  • Not an agent: Asking ChatGPT to write code
  • An agent: A system that writes code, runs tests, fixes failures, and iterates until tests pass

The key differences:

  • Autonomy: The agent decides what to do next
  • Goal-directed: It's working toward an objective, not just responding to prompts
  • Action-taking: It can affect its environment, not just generate text

Agent Architecture Flow

flowchart LR
  User -->|Intent| Agent
  Agent --> Planner
  Planner --> ToolSelector
  ToolSelector --> Tools
  Tools --> Agent
  Agent --> Memory
  Memory --> Agent
  Agent -->|Response| User

Single-Agent Architecture with Tools

The simplest agent architecture is one agent with access to tools. This is where most production systems start—and where many should stay.

The MCP Approach

Model Context Protocol makes this pattern straightforward:

// Agent has access to specific tools
const agent = new Agent({
  model: "claude-sonnet-4",
  tools: [
    databaseMCPServer,    // Query and modify database
    apiMCPServer,         // Call external APIs
    fileSystemMCPServer   // Read and write files
  ]
});

// Agent autonomously uses tools to achieve goal
await agent.run("Analyze user churn and create a retention campaign");

The agent:

  1. Breaks down the goal into steps
  2. Calls appropriate tools (query database, analyze data, write campaign)
  3. Iterates based on tool responses
  4. Returns final result

When This Works

Single-agent architecture is sufficient when:

  • The task is bounded and well-defined
  • Tools cover the full capability surface needed
  • Failures can be handled with retries and error messages
  • No parallel execution needed across different contexts

Most production use cases fall into this category.

Tool Calling Best Practices

Make your tools agent-friendly:

// Good: Clear purpose, typed inputs, useful descriptions
{
  name: "query_users",
  description: "Search for users matching criteria. Returns user objects with id, email, name, and signup_date.",
  inputSchema: {
    type: "object",
    properties: {
      email: {
        type: "string",
        description: "Filter by email (supports wildcards: user@*)"
      },
      signupAfter: {
        type: "string",
        format: "date",
        description: "Filter users who signed up after this date (YYYY-MM-DD)"
      },
      limit: {
        type: "number",
        default: 100,
        maximum: 1000,
        description: "Maximum results to return"
      }
    }
  }
}

The agent can reason about when to use this tool and how to construct valid inputs.

Multi-Agent Orchestration Patterns

When single agents hit limits, multi-agent systems become necessary. But they introduce complexity—only add agents when justified.

Pattern 1: Supervisor Architecture

One supervisor agent coordinates multiple specialist agents.

         [Supervisor]
              |
      ________|________
      |       |       |
   [Agent A][Agent B][Agent C]

Example use case: Code review system

  • Supervisor: Coordinates the review process
  • Security Agent: Checks for vulnerabilities
  • Performance Agent: Analyzes performance implications
  • Style Agent: Verifies code standards
class SupervisorAgent {
  async review(code: string) {
    // Supervisor delegates to specialists
    const [security, performance, style] = await Promise.all([
      this.securityAgent.analyze(code),
      this.performanceAgent.analyze(code),
      this.styleAgent.analyze(code)
    ]);

    // Supervisor synthesizes results
    return this.synthesize({security, performance, style});
  }
}

When to use:

  • Clear division of responsibilities
  • Specialists have distinct domains
  • Results need aggregation

Pattern 2: Peer-to-Peer Architecture

Agents communicate directly without central coordination.

[Agent A] <---> [Agent B]
    ^               ^
    |               |
    v               v
[Agent C] <---> [Agent D]

Example use case: Distributed monitoring system

  • Each agent monitors a different service
  • Agents share information about dependencies
  • Collective decision-making on alert severity
class MonitorAgent {
  async detectIssue(metric: Metric) {
    if (this.isAnomalous(metric)) {
      // Ask peer agents about their status
      const peerStatuses = await this.queryPeers();

      // Decide severity based on collective state
      if (peerStatuses.many(s => s.degraded)) {
        return { severity: "critical", scope: "system-wide" };
      }
    }
  }
}

When to use:

  • No natural hierarchy
  • Agents need real-time coordination
  • Distributed decision-making required

Pattern 3: Hierarchical Architecture

Multi-level organization with delegation down the hierarchy.

       [Executive]
           |
    _______|_______
    |             |
[Manager A]   [Manager B]
    |             |
  __|__         __|__
  |   |         |   |
[W1][W2]      [W3][W4]

Example use case: Infrastructure provisioning

  • Executive: Understands full infrastructure request
  • Managers: Handle specific infrastructure domains (compute, network, storage)
  • Workers: Execute specific provisioning tasks

When to use:

  • Complex, multi-phase workflows
  • Natural delegation structure
  • Different abstraction levels needed

Tool Calling Patterns Across Agents

How agents interact with tools affects architecture significantly.

Shared Tool Access

All agents use the same tool set:

const sharedTools = [
  databaseServer,
  apiServer,
  logServer
];

const agent1 = new Agent({ tools: sharedTools });
const agent2 = new Agent({ tools: sharedTools });

Advantages:

  • Consistent capabilities
  • Simpler to reason about

Challenges:

  • Potential conflicts (both agents modifying same data)
  • Need coordination mechanisms

Specialized Tool Access

Each agent has domain-specific tools:

const securityAgent = new Agent({
  tools: [vulnerabilityScannerServer, secretDetectionServer]
});

const performanceAgent = new Agent({
  tools: [profilerServer, benchmarkServer]
});

Advantages:

  • Clear separation of concerns
  • Reduced complexity per agent

Challenges:

  • Need inter-agent communication
  • Supervisor must understand which agent has which capabilities

MCP in Multi-Agent Systems

MCP shines in multi-agent architectures because tools are decoupled from agents:

// Same MCP server, different agents
const databaseServer = new DatabaseMCPServer();

// Agent A uses it for analytics
const analyticsAgent = new Agent({
  tools: [databaseServer, analyticsServer]
});

// Agent B uses it for CRUD operations
const apiAgent = new Agent({
  tools: [databaseServer, validationServer]
});

The tool implementation is shared, but agent usage patterns differ.

When to Use Single vs. Multi-Agent

Here's my decision framework:

Use Single Agent When:

  • Task has clear beginning and end
  • One "persona" or expertise domain needed
  • Tool set is cohesive
  • Failures can be handled linearly
  • Debugging complexity should be minimized

Example: Customer support chatbot with database, email, and knowledge base tools.

Use Multi-Agent When:

  • Need parallel execution in different contexts
  • Distinct expertise domains required
  • Single agent context window becomes limiting
  • Different agents need different prompting strategies
  • Workflow naturally decomposes into stages

Example: Code generation system where one agent writes code, another reviews security, another writes tests.

Practical Implementation Tips

1. Start Simple, Add Complexity Only When Needed

Begin with single agent. Add second agent only when you hit clear limits.

2. Make Agent Boundaries Explicit

// Good: Clear responsibility
class SecurityReviewAgent {
  async review(code: string): Promise<SecurityReport> {
    // This agent ONLY does security review
  }
}

// Bad: Unclear boundary
class ReviewAgent {
  async review(code: string): Promise<Report> {
    // Does this do security? Performance? Style? All of them?
  }
}

3. Design Agent Communication Protocols

If agents communicate, formalize how:

type AgentMessage = {
  from: string;
  to: string;
  type: 'request' | 'response' | 'notification';
  payload: any;
  correlationId: string;
};

4. Implement Circuit Breakers Between Agents

Prevent cascading failures:

class AgentCoordinator {
  async callAgent(agentId: string, task: Task) {
    if (this.failures.get(agentId) > 3) {
      throw new Error(`Agent ${agentId} is failing, circuit open`);
    }
    // ... call agent
  }
}

5. Comprehensive Observability

Track agent interactions:

await trace.span('agent-collaboration', async () => {
  trace.setAttribute('supervisor', supervisorId);
  trace.setAttribute('workers', workerIds);

  const results = await coordinateWork();

  trace.addEvent('collaboration-complete', {
    successCount: results.filter(r => r.success).length,
    totalDuration: elapsed
  });
});

The Future: Agent Ecosystems

We're heading toward agent ecosystems where:

  • Agents discover each other via registries
  • Tools are published as MCP servers anyone can use
  • Agents compose dynamically based on task requirements
  • Standard protocols govern inter-agent communication

This is already emerging in the MCP ecosystem.

Start Where You Are

Most production agent systems should start as single agents with tools. Add complexity only when justified.

The architecture isn't about sophistication—it's about matching system complexity to problem complexity.

Build the simplest agent system that solves your problem. Then iterate.


Building agent systems? I'd love to hear about your architecture challenges. Reach out on X or check out my course on MCP-based agent architectures.